Transcript structure and domain display: A customizable transcript visualization tool

Authors

Kenneth A Watanabe, University of Nevada, Las VegasFollow
Kaiwang Ma, University of Nevada, Las Vegas
A Homayouni, University of Nevada, Las VegasFollow
P J. Rushton, Texas Agricultural Experiment StationFollow
Qingxi Jeffrey Shen, University of Nevada, Las VegasFollow

Document Type

Article

Publication Date

1-1-2016

Publication Title

Bioinformatics

Volume

32

Issue

13

First page number:

2024

Last page number:

2025

Abstract

Summary: Transcript Structure and Domain Display (TSDD) is a publicly available, web-based program that provides publication quality images of transcript structures and domains. TSDD is capable of producing transcript structures from GFF/GFF3 and BED files. Alternatively, the GFF files of several model organisms have been pre-loaded so that users only needs to enter the locus IDs of the transcripts to be displayed. Visualization of transcripts provides many benefits to researchers, ranging from evolutionary analysis of DNA-binding domains to predictive function modeling. Availability and implementation: TSDD is freely available for non-commercial users at http://shen lab.sols.unlv.edu/shenlab/software/TSD/transcript-display.html. Contact: jeffery.shen@unlv.Nevada.edu. © The Author 2016.

Language

English

Repository Citation

Watanabe, K., Ma, K., Homayouni, A., Rushton, P. J., Shen, Q. (2016). Transcript structure and domain display: A customizable transcript visualization tool. Bioinformatics, 32(13), 2024-2025.
http://dx.doi.org/10.1093/bioinformatics/btw095